PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02981.30
Common NameJCGZ_08456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 680aa    MW: 73420.4 Da    PI: 5.5415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02981.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07255275526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd C +aHg
  Jcr4S02981.30 255 PCPEFRK-GSCRLGDACEYAHG 275
                    8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.65E-1634151IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-956143IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.64575145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002475105IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.1E-1676154IPR020683Ankyrin repeat-containing domain
CDDcd002041.46E-1477169No hitNo description
PROSITE profilePS5008812.422110145IPR002110Ankyrin repeat
SMARTSM002487.2E-4110142IPR002110Ankyrin repeat
SMARTSM003568.8E-5250276IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5255275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634255277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4283313IPR000571Zinc finger, CCCH-type
SMARTSM0035620285308IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221285309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MCTGSKRKPT HTGFIMENEF QKQDGYYCDL SILLELSASN DLLGFKRAIE EEGHDVNELG  60
LWYGRRIGSR KMGFEERTPL MIAALFGSKD ILNYILEMGR VDVNRCCGSD GATALHCAVA  120
GGSASTLEVV KLLLDASADP DAVDANGNHA ADLIAPVVSS GFVSKRKALE IMLKGGSTTE  180
ETCFMVDQNS NETDGQEQQE ASTPRVSKDG TEKKEYPVDL TLPDIKNGIY ECPFVHPGEN  240
ARRRDPRKYH YSCVPCPEFR KGSCRLGDAC EYAHGIFECW LHPAQYRTRL CKDETNCSRR  300
VCFFAHKPEE LRPLYASTGS AVPSPRSFSA NCSGLDMGSL SPLALGSPSV LIPPTSTPPM  360
TPTGSSSPMG GWPNQCNIVP PTLQLPGSRL KSALSARDMD LEMELLGLDN HRRRQQQLID  420
EISGLSSPSS WNNGLSTASA YAAPGDRTAE LNRLGGVKPT NLEDIFGSAD PTILSPVQGL  480
SVDATTSKLQ SPTGIQMRQN INQQLRSSYP AGFSSSPVRT STFGIDPSGP AAAAVLSSRS  540
AAFAKRSQSF IERSAVNRHT GFSSPTSSAT IMPSNLSDWG SPDGKLDWGI QGEQLNKLQK  600
SASFGIRSNG NSLAGSAVPL PATLDEPDVS WVQSLVKDTP SMNSGQLGFE QQQCHLNTGG  660
SEMLPAWVEQ LYIEQEQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067418.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A067LPM40.0A0A067LPM4_JATCU; Uncharacterized protein
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]